nsv3170267
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,961
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 306 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 306 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 135 SVs from 18 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv3170267 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nsv3170267 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nsv3170267 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv14242144 | deletion | MLY_6 | SNP array | SNP genotyping analysis | 1 | 132 |
nssv14242688 | deletion | SNI_5 | SNP array | SNP genotyping analysis | 1 | 124 |
nssv14243940 | deletion | NGO_6 | SNP array | SNP genotyping analysis | 1 | 141 |
nssv14244126 | deletion | NGO_47 | SNP array | SNP genotyping analysis | 1 | 124 |
nssv14245455 | deletion | SNI_14 | SNP array | SNP genotyping analysis | 1 | 136 |
nssv14245864 | deletion | NGO_15 | SNP array | SNP genotyping analysis | 1 | 124 |
nssv14246301 | deletion | SNI_4 | SNP array | SNP genotyping analysis | 1 | 134 |
nssv14247474 | deletion | NGO_4 | SNP array | SNP genotyping analysis | 0 | 126 |
nssv14248338 | deletion | NGO_5 | SNP array | SNP genotyping analysis | 1 | 120 |
nssv14248398 | deletion | SNI_8 | SNP array | SNP genotyping analysis | 1 | 118 |
nssv14248952 | duplication | NGO_11 | SNP array | SNP genotyping analysis | 3 | 131 |
nssv14249241 | deletion | NGO_32 | SNP array | SNP genotyping analysis | 1 | 153 |
nssv14250447 | deletion | PML_4 | SNP array | SNP genotyping analysis | 1 | 142 |
nssv14251130 | deletion | NGO_36 | SNP array | SNP genotyping analysis | 1 | 128 |
nssv14252158 | deletion | NGO_45 | SNP array | SNP genotyping analysis | 1 | 117 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv14242144 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14242688 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14243940 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14244126 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14245455 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14245864 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14246301 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14247474 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14248338 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14248398 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14248952 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)dup | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14249241 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14250447 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14251130 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14252158 | Remapped | Perfect | NC_000019.10:g.(91 63124_9163996)_(91 67445_9174084)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 9,163,124 | 9,163,996 | 9,167,445 | 9,174,084 |
nssv14242144 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14242688 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14243940 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14244126 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14245455 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14245864 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14246301 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14247474 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14248338 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14248398 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14248952 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)dup | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14249241 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14250447 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14251130 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14252158 | Remapped | Perfect | NC_000019.9:g.(927 3800_9274672)_(927 8121_9284760)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 9,273,800 | 9,274,672 | 9,278,121 | 9,284,760 |
nssv14242144 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14242688 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14243940 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14244126 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14245455 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14245864 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14246301 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14247474 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14248338 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14248398 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14248952 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)dup | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14249241 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14250447 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14251130 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 | ||
nssv14252158 | Submitted genomic | NC_000019.8:g.(913 4800_9135672)_(913 9121_9145760)del | NCBI36 (hg18) | NC_000019.8 | Chr19 | 9,134,800 | 9,135,672 | 9,139,121 | 9,145,760 |