nsv3200428
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:copy number variation
- Method Type:Optical mapping
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:135,318
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 348 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 348 SVs from 53 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3200428 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000004.12 | Chr4 | 104,214,855 | 104,350,172 | ||
| nsv3200428 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 105,136,012 | 105,271,329 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14272851 | deletion | SAMN00006580 | Optical mapping | Optical mapping | Homozygous | 14,212 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14272851 | Submitted genomic | NC_000004.12:g.(10 4214855_?)_(?_1043 50172)del | GRCh38 (hg38) | NC_000004.12 | Chr4 | 104,214,855 | 104,350,172 | ||
| nssv14272851 | Remapped | Perfect | NC_000004.11:g.(10 5136012_?)_(?_1052 71329)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 105,136,012 | 105,271,329 |