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dbVar

Database of genomic structural variation

nsv3217465

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:21,834

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 271 SVs from 60 studies. See in: genome view

Submitted genomic39,102,625-39,125,116

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3217465	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nsv3217465	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14347227	duplication	HG00512	Sequencing	Sequence alignment	3	13,827
nssv14347228	duplication	SAMN00006466	Sequencing	Sequence alignment	2	14,137
nssv14347229	duplication	HG00514	Sequencing	Sequence alignment	3	39,861
nssv14347230	duplication	SAMN00006579	Sequencing	Sequence alignment	2	13,953
nssv14347231	duplication	SAMN00006580	Sequencing	Sequence alignment	2	14,212
nssv14347232	duplication	SAMN00006581	Sequencing	Sequence alignment	2	41,185
nssv14347233	duplication	SAMN00001694	Sequencing	Sequence alignment	2	16,419
nssv14347234	duplication	SAMN00001695	Sequencing	Sequence alignment	2	15,732
nssv14347235	duplication	SAMN00001696	Sequencing	Sequence alignment	2	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14347227	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347228	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347229	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347230	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347231	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347232	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347233	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347234	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347235	Submitted genomic		NC_000009.12:g.(39 102625_39103283)_( 39124458_39125116) dup	GRCh38 (hg38)		NC_000009.12	Chr9	39,102,954 (-329, +329)	39,124,787 (-329, +329)
nssv14347227	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347228	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347229	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347230	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347231	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347232	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347233	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347234	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)
nssv14347235	Remapped	Perfect	NC_000009.11:g.(39 102622_39103280)_( 39124455_39125113) dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	39,102,951 (-329, +329)	39,124,784 (-329, +329)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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