nsv3234961
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,020
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 430 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 430 SVs from 72 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3234961 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nsv3234961 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14329130 | sequence alteration | HG00512 | Sequencing | Sequence alignment | Heterozygous | 13,827 |
| nssv14329131 | sequence alteration | SAMN00006466 | Sequencing | Sequence alignment | Heterozygous | 14,137 |
| nssv14329132 | sequence alteration | HG00514 | Sequencing | Sequence alignment | Heterozygous | 39,861 |
| nssv14329133 | sequence alteration | SAMN00006579 | Sequencing | Sequence alignment | Heterozygous | 13,953 |
| nssv14329134 | sequence alteration | SAMN00006580 | Sequencing | Sequence alignment | Heterozygous | 14,212 |
| nssv14329135 | sequence alteration | SAMN00006581 | Sequencing | Sequence alignment | Heterozygous | 41,185 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv14329130 | Submitted genomic | GRCh38 (hg38) | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nssv14329131 | Submitted genomic | GRCh38 (hg38) | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nssv14329132 | Submitted genomic | GRCh38 (hg38) | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nssv14329133 | Submitted genomic | GRCh38 (hg38) | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nssv14329134 | Submitted genomic | GRCh38 (hg38) | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nssv14329135 | Submitted genomic | GRCh38 (hg38) | NC_000006.12 | Chr6 | 54,060,003 (-10, +17) | 54,070,022 (-2, +2) | ||
| nssv14329130 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |
| nssv14329131 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |
| nssv14329132 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |
| nssv14329133 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |
| nssv14329134 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |
| nssv14329135 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,924,801 (-10, +17) | 53,934,820 (-2, +2) |