nsv3238729
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:19,489
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 143 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 143 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3238729 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 163,216,749 (-15, +15) | 163,236,237 (-15, +15) | ||
| nsv3238729 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 162,643,755 (-15, +15) | 162,663,243 (-15, +15) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14325238 | inversion | SAMN00001694 | Sequencing | Sequence alignment | Heterozygous | 16,419 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14325238 | Submitted genomic | NC_000005.10:g.(16 3216734_163216764) _(163236222_163236 252)inv19488 | GRCh38 (hg38) | NC_000005.10 | Chr5 | 163,216,749 (-15, +15) | 163,236,237 (-15, +15) | ||
| nssv14325238 | Remapped | Perfect | NC_000005.9:g.(162 643740_162643770)_ (162663228_1626632 58)inv19488 | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 162,643,755 (-15, +15) | 162,663,243 (-15, +15) |