Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv3243287

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:sequence alteration
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:8,488

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 494 SVs from 81 studies. See in: genome view

Submitted genomic172,503,872-172,512,381

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3243287	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nsv3243287	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14317254	sequence alteration	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14317255	sequence alteration	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14317256	sequence alteration	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14317257	sequence alteration	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14317258	sequence alteration	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14317259	sequence alteration	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14317260	sequence alteration	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14317254	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317255	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317256	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317257	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317258	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317259	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317260	Submitted genomic		GRCh38 (hg38)		NC_000004.12	Chr4	172,503,883 (-11, +11)	172,512,370 (-11, +11)
nssv14317254	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)
nssv14317255	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)
nssv14317256	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)
nssv14317257	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)
nssv14317258	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)
nssv14317259	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)
nssv14317260	Remapped	Perfect	GRCh37.p13	First Pass	NC_000004.11	Chr4	173,425,034 (-11, +11)	173,433,521 (-11, +11)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

You are here: NCBI