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dbVar

Database of genomic structural variation

nsv3243434

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:15,734

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 581 SVs from 81 studies. See in: genome view

Submitted genomic49,712,148-49,731,183

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3243434	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nsv3243434	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14359034	inversion	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14359035	inversion	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14359036	inversion	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14359037	inversion	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14359038	inversion	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14359039	inversion	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14359040	inversion	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14359041	inversion	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732
nssv14359042	inversion	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14359034	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359035	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359036	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359037	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359038	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359039	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359040	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359041	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359042	Submitted genomic		NC_000011.10:g.(49 712148_49715450)_( 49727881_49731183) inv15733	GRCh38 (hg38)		NC_000011.10	Chr11	49,713,799 (-1651, +1651)	49,729,532 (-1651, +1651)
nssv14359034	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359035	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359036	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359037	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359038	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359039	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359040	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359041	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)
nssv14359042	Remapped	Perfect	NC_000011.9:g.(497 33700_49737002)_(4 9749433_49752735)i nv15733	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,735,351 (-1651, +1651)	49,751,084 (-1651, +1651)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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