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dbVar

Database of genomic structural variation

nsv3245115

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:sequence alteration
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:8,973

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 136 SVs from 35 studies. See in: genome view

Submitted genomic33,474,664-33,483,718

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3245115	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nsv3245115	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14359921	sequence alteration	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14359922	sequence alteration	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14359923	sequence alteration	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14359924	sequence alteration	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14359925	sequence alteration	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14359926	sequence alteration	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14359927	sequence alteration	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14359928	sequence alteration	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732
nssv14359929	sequence alteration	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14359921	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359922	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359923	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359924	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359925	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359926	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359927	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359928	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359929	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	33,474,705 (-41, +41)	33,483,677 (-41, +41)
nssv14359921	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359922	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359923	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359924	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359925	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359926	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359927	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359928	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)
nssv14359929	Remapped	Good	GRCh37.p13	First Pass	NC_000001.10	Chr1	33,940,306 (-41, +41)	33,949,277 (-41, +41)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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