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dbVar

Database of genomic structural variation

nsv3317108

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:6,865

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 227 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):91,633,777-91,640,641

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3317108	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nsv3317108	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000009.11	Chr9	94,396,059	94,402,923

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14467832	copy number loss	M2111	SNP array	SNP genotyping analysis	18
nssv14467999	copy number loss	M2124	SNP array	SNP genotyping analysis	13
nssv14468737	copy number loss	M2177	SNP array	SNP genotyping analysis	15
nssv14468829	copy number loss	M2182	SNP array	SNP genotyping analysis	32
nssv14470763	copy number loss	M2373	SNP array	SNP genotyping analysis	15
nssv14471695	copy number loss	M2477	SNP array	SNP genotyping analysis	20
nssv14471977	copy number loss	M2512	SNP array	SNP genotyping analysis	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14467832	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14467999	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14468737	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14468829	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14470763	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14471695	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14471977	Remapped	Perfect	NC_000009.12:g.(?_ 91633777)_(9164064 1_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	91,633,777	91,640,641
nssv14467832	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923
nssv14467999	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923
nssv14468737	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923
nssv14468829	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923
nssv14470763	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923
nssv14471695	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923
nssv14471977	Submitted genomic		NC_000009.11:g.(?_ 94396059)_(9440292 3_?)del	GRCh37 (hg19)		NC_000009.11	Chr9	94,396,059	94,402,923

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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