Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv3317474

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:9,477

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 218 SVs from 52 studies. See in: genome view

Remapped(Score: Perfect):85,968,426-85,977,902

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3317474	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	85,968,426	85,977,902
nsv3317474	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	86,511,657	86,521,133

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14468971	copy number loss	M2193	SNP array	SNP genotyping analysis	17
nssv14469391	copy number loss	M2232	SNP array	SNP genotyping analysis	12
nssv14470410	copy number loss	M2338	SNP array	SNP genotyping analysis	17
nssv14471680	copy number loss	M2477	SNP array	SNP genotyping analysis	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14468971	Remapped	Perfect	NC_000015.10:g.(?_ 85968426)_(8597790 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	85,968,426	85,977,902
nssv14469391	Remapped	Perfect	NC_000015.10:g.(?_ 85968426)_(8597790 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	85,968,426	85,977,902
nssv14470410	Remapped	Perfect	NC_000015.10:g.(?_ 85968426)_(8597790 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	85,968,426	85,977,902
nssv14471680	Remapped	Perfect	NC_000015.10:g.(?_ 85968426)_(8597790 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	85,968,426	85,977,902
nssv14468971	Submitted genomic		NC_000015.9:g.(?_8 6511657)_(86521133 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	86,511,657	86,521,133
nssv14469391	Submitted genomic		NC_000015.9:g.(?_8 6511657)_(86521133 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	86,511,657	86,521,133
nssv14470410	Submitted genomic		NC_000015.9:g.(?_8 6511657)_(86521133 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	86,511,657	86,521,133
nssv14471680	Submitted genomic		NC_000015.9:g.(?_8 6511657)_(86521133 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	86,511,657	86,521,133

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI