nsv3317725
- Organism: Homo sapiens
- Study:nstd157 (Frenkel et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:9,915
- Publication(s):Frenkel et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 209 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 209 SVs from 40 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3317725 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 76,336,960 | 76,346,874 |
| nsv3317725 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 74,333,041 | 74,342,955 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14470812 | copy number loss | M2383 | SNP array | SNP genotyping analysis | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14470812 | Remapped | Perfect | NC_000017.11:g.(?_ 76336960)_(7634687 4_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 76,336,960 | 76,346,874 |
| nssv14470812 | Submitted genomic | NC_000017.10:g.(?_ 74333041)_(7434295 5_?)del | GRCh37 (hg19) | NC_000017.10 | Chr17 | 74,333,041 | 74,342,955 |