nsv3318184

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:13
Validation:Not tested
Clinical Assertions: No
Region Size:16,040

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 475 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):97,271,952-97,287,991

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3318184	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nsv3318184	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	97,815,182	97,831,221

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14467626	copy number loss	M1206	SNP array	SNP genotyping analysis	63
nssv14468359	copy number loss	M2145	SNP array	SNP genotyping analysis	16
nssv14468374	copy number loss	M2147	SNP array	SNP genotyping analysis	18
nssv14468593	copy number loss	M2167	SNP array	SNP genotyping analysis	21
nssv14468755	copy number loss	M2179	SNP array	SNP genotyping analysis	19
nssv14468930	copy number loss	M2191	SNP array	SNP genotyping analysis	24
nssv14469241	copy number loss	M2218	SNP array	SNP genotyping analysis	21
nssv14469483	copy number loss	M2240	SNP array	SNP genotyping analysis	13
nssv14469977	copy number loss	M2292	SNP array	SNP genotyping analysis	17
nssv14470496	copy number loss	M2351	SNP array	SNP genotyping analysis	14
nssv14470809	copy number loss	M2383	SNP array	SNP genotyping analysis	23
nssv14470935	copy number loss	M2394	SNP array	SNP genotyping analysis	15
nssv14471806	copy number loss	M2495	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14467626	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14468359	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14468374	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14468593	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14468755	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14468930	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14469241	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14469483	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14469977	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14470496	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14470809	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14470935	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14471806	Remapped	Perfect	NC_000015.10:g.(?_ 97271952)_(9728799 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	97,271,952	97,287,991
nssv14467626	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14468359	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14468374	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14468593	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14468755	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14468930	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14469241	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14469483	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14469977	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14470496	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14470809	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14470935	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221
nssv14471806	Submitted genomic		NC_000015.9:g.(?_9 7815182)_(97831221 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	97,815,182	97,831,221

dbVar

Database of genomic structural variation

nsv3318184

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant