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dbVar

Database of genomic structural variation

nsv3318286

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:118,715

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 488 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):26,004,870-26,123,584

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3318286	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	26,004,870	26,123,584
nsv3318286	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	26,046,361	26,165,075

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14470392	copy number loss	M2337	SNP array	SNP genotyping analysis	36
nssv14471827	copy number loss	M2496	SNP array	SNP genotyping analysis	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14470392	Remapped	Perfect	NC_000003.12:g.(?_ 26004870)_(2612358 4_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	26,004,870	26,123,584
nssv14471827	Remapped	Perfect	NC_000003.12:g.(?_ 26004870)_(2612358 4_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	26,004,870	26,123,584
nssv14470392	Submitted genomic		NC_000003.11:g.(?_ 26046361)_(2616507 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	26,046,361	26,165,075
nssv14471827	Submitted genomic		NC_000003.11:g.(?_ 26046361)_(2616507 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	26,046,361	26,165,075

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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