nsv3318287
- Organism: Homo sapiens
- Study:nstd157 (Frenkel et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:420,436
- Publication(s):Frenkel et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1996 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 1996 SVs from 90 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3318287 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 6,310,453 | 6,730,888 |
| nsv3318287 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 6,360,454 | 6,780,889 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14469243 | copy number loss | M2218 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14469243 | Remapped | Perfect | NC_000016.10:g.(?_ 6310453)_(6730888_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 6,310,453 | 6,730,888 |
| nssv14469243 | Submitted genomic | NC_000016.9:g.(?_6 360454)_(6780889_? )del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 6,360,454 | 6,780,889 |