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dbVar

Database of genomic structural variation

nsv3318662

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:6,001

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 179 SVs from 43 studies. See in: genome view

Remapped(Score: Perfect):55,790,905-55,796,905

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3318662	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nsv3318662	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	56,083,103	56,089,103

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14469373	copy number loss	M2231	SNP array	SNP genotyping analysis	18
nssv14469862	copy number loss	M2277	SNP array	SNP genotyping analysis	14
nssv14470146	copy number loss	M2315	SNP array	SNP genotyping analysis	17
nssv14470237	copy number loss	M2322	SNP array	SNP genotyping analysis	16
nssv14470755	copy number loss	M2373	SNP array	SNP genotyping analysis	15
nssv14471462	copy number loss	M2454	SNP array	SNP genotyping analysis	17
nssv14471986	copy number loss	M2513	SNP array	SNP genotyping analysis	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14469373	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14469862	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14470146	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14470237	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14470755	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14471462	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14471986	Remapped	Perfect	NC_000015.10:g.(?_ 55790905)_(5579690 5_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,790,905	55,796,905
nssv14469373	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103
nssv14469862	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103
nssv14470146	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103
nssv14470237	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103
nssv14470755	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103
nssv14471462	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103
nssv14471986	Submitted genomic		NC_000015.9:g.(?_5 6083103)_(56089103 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	56,083,103	56,089,103

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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