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dbVar

Database of genomic structural variation

nsv3318830

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:47,054

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 334 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):113,853,972-113,901,025

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3318830	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	113,853,972	113,901,025
nsv3318830	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	113,572,819	113,619,872

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14468433	copy number loss	M2152	SNP array	SNP genotyping analysis	13
nssv14469380	copy number loss	M2231	SNP array	SNP genotyping analysis	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14468433	Remapped	Perfect	NC_000003.12:g.(?_ 113853972)_(113901 025_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	113,853,972	113,901,025
nssv14469380	Remapped	Perfect	NC_000003.12:g.(?_ 113853972)_(113901 025_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	113,853,972	113,901,025
nssv14468433	Submitted genomic		NC_000003.11:g.(?_ 113572819)_(113619 872_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	113,572,819	113,619,872
nssv14469380	Submitted genomic		NC_000003.11:g.(?_ 113572819)_(113619 872_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	113,572,819	113,619,872

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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