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dbVar

Database of genomic structural variation

nsv3318841

Organism: Homo sapiens

Study:nstd157 (Frenkel et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:39,450

Publication(s):Frenkel et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 558 SVs from 77 studies. See in: genome view

Remapped(Score: Perfect):66,315,274-66,354,723

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3318841	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nsv3318841	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000010.10	Chr10	68,075,032	68,114,481

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14467886	copy number loss	M2115	SNP array	SNP genotyping analysis	19
nssv14467904	copy number loss	M2116	SNP array	SNP genotyping analysis	21
nssv14469101	copy number loss	M2201	SNP array	SNP genotyping analysis	16
nssv14470462	copy number loss	M2342	SNP array	SNP genotyping analysis	13
nssv14470896	copy number loss	M2391	SNP array	SNP genotyping analysis	18
nssv14470993	copy number loss	M2398	SNP array	SNP genotyping analysis	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14467886	Remapped	Perfect	NC_000010.11:g.(?_ 66315274)_(6635472 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nssv14467904	Remapped	Perfect	NC_000010.11:g.(?_ 66315274)_(6635472 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nssv14469101	Remapped	Perfect	NC_000010.11:g.(?_ 66315274)_(6635472 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nssv14470462	Remapped	Perfect	NC_000010.11:g.(?_ 66315274)_(6635472 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nssv14470896	Remapped	Perfect	NC_000010.11:g.(?_ 66315274)_(6635472 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nssv14470993	Remapped	Perfect	NC_000010.11:g.(?_ 66315274)_(6635472 3_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	66,315,274	66,354,723
nssv14467886	Submitted genomic		NC_000010.10:g.(?_ 68075032)_(6811448 1_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	68,075,032	68,114,481
nssv14467904	Submitted genomic		NC_000010.10:g.(?_ 68075032)_(6811448 1_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	68,075,032	68,114,481
nssv14469101	Submitted genomic		NC_000010.10:g.(?_ 68075032)_(6811448 1_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	68,075,032	68,114,481
nssv14470462	Submitted genomic		NC_000010.10:g.(?_ 68075032)_(6811448 1_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	68,075,032	68,114,481
nssv14470896	Submitted genomic		NC_000010.10:g.(?_ 68075032)_(6811448 1_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	68,075,032	68,114,481
nssv14470993	Submitted genomic		NC_000010.10:g.(?_ 68075032)_(6811448 1_?)del	GRCh37 (hg19)		NC_000010.10	Chr10	68,075,032	68,114,481

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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