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dbVar

Database of genomic structural variation

nsv3341406

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:16,623

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 566 SVs from 67 studies. See in: genome view

Submitted genomic1,231,572-1,248,194

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3341406	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	1,231,572	1,248,194
nsv3341406	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14556917	inversion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14557539	inversion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14562325	inversion	SAMN05603745	Sequencing	de novo and local sequence assembly	27,447
nssv14565156	inversion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14569099	inversion	SAMN04251426	Sequencing	de novo and local sequence assembly	22,074
nssv14569391	inversion	SAMN03838746	Sequencing	de novo and local sequence assembly	26,336

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14556917	Submitted genomic		NC_000016.10:g.123 1572_1248194inv	GRCh38 (hg38)		NC_000016.10	Chr16	1,231,572	1,248,194
nssv14557539	Submitted genomic		NC_000016.10:g.123 1572_1248194inv	GRCh38 (hg38)		NC_000016.10	Chr16	1,231,572	1,248,194
nssv14562325	Submitted genomic		NC_000016.10:g.123 1572_1248194inv	GRCh38 (hg38)		NC_000016.10	Chr16	1,231,572	1,248,194
nssv14565156	Submitted genomic		NC_000016.10:g.123 1572_1248194inv	GRCh38 (hg38)		NC_000016.10	Chr16	1,231,572	1,248,194
nssv14569099	Submitted genomic		NC_000016.10:g.123 1572_1248194inv	GRCh38 (hg38)		NC_000016.10	Chr16	1,231,572	1,248,194
nssv14569391	Submitted genomic		NC_000016.10:g.123 1572_1248194inv	GRCh38 (hg38)		NC_000016.10	Chr16	1,231,572	1,248,194
nssv14556917	Remapped	Perfect	NC_000016.9:g.1281 573_1298195invNC_0 00016.9:g.1281573_ 1298195inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195
nssv14557539	Remapped	Perfect	NC_000016.9:g.1281 573_1298195invNC_0 00016.9:g.1281573_ 1298195inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195
nssv14562325	Remapped	Perfect	NC_000016.9:g.1281 573_1298195invNC_0 00016.9:g.1281573_ 1298195inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195
nssv14565156	Remapped	Perfect	NC_000016.9:g.1281 573_1298195invNC_0 00016.9:g.1281573_ 1298195inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195
nssv14569099	Remapped	Perfect	NC_000016.9:g.1281 573_1298195invNC_0 00016.9:g.1281573_ 1298195inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195
nssv14569391	Remapped	Perfect	NC_000016.9:g.1281 573_1298195invNC_0 00016.9:g.1281573_ 1298195inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	1,281,573	1,298,195

Showing 12 of 18

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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