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dbVar

Database of genomic structural variation

nsv3344629

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 183 SVs from 32 studies. See in: genome view

Submitted genomic86,278,875-86,278,875

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3344629	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	86,278,875	86,278,875
nsv3344629	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14574074	herv insertion	SAMN04251426	Sequencing	de novo and local sequence assembly	22,074
nssv14575556	herv insertion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14578086	herv insertion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14579455	herv insertion	SAMN09690649	Sequencing	de novo and local sequence assembly	21,495
nssv14580770	herv insertion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14582595	herv insertion	SAMN05603745	Sequencing	de novo and local sequence assembly	27,447
nssv14583382	herv insertion	SAMN05603729	Sequencing	de novo and local sequence assembly	24,108
nssv14583816	herv insertion	SAMN05181962	Sequencing	de novo and local sequence assembly	23,563
nssv14591241	herv insertion	SAMN09651199	Sequencing	de novo and local sequence assembly	27,381

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14574074	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14575556	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14578086	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14579455	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14580770	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14582595	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14583382	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14583816	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14591241	Submitted genomic		NC_000016.10:g.862 78875_86278876ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,875	86,278,875
nssv14574074	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14575556	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14578086	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14579455	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14580770	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14582595	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14583382	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14583816	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481
nssv14591241	Remapped	Perfect	NC_000016.9:g.8631 2481_86312482ins64 NC_000016.9:g.8631 2481_86312482ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,481	86,312,481

Showing 18 of 27

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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