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dbVar

Database of genomic structural variation

nsv3350848

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 183 SVs from 32 studies. See in: genome view

Submitted genomic86,278,914-86,278,914

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3350848	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	86,278,914	86,278,914
nsv3350848	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14572359	herv insertion	SAMN09690649	Sequencing	de novo and local sequence assembly	21,495
nssv14573058	herv insertion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14573561	herv insertion	SAMN04251426	Sequencing	de novo and local sequence assembly	22,074
nssv14575444	herv insertion	SAMN09651199	Sequencing	de novo and local sequence assembly	27,381
nssv14577540	herv insertion	SAMN05603729	Sequencing	de novo and local sequence assembly	24,108
nssv14583482	herv insertion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14583721	herv insertion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14585634	herv insertion	SAMN03838746	Sequencing	de novo and local sequence assembly	26,336
nssv14590039	herv insertion	SAMN05181962	Sequencing	de novo and local sequence assembly	23,563

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14572359	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14573058	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14573561	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14575444	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14577540	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14583482	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14583721	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14585634	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14590039	Submitted genomic		NC_000016.10:g.862 78914_86278915ins6 4	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,914	86,278,914
nssv14572359	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14573058	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14573561	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14575444	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14577540	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14583482	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14583721	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14585634	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520
nssv14590039	Remapped	Perfect	NC_000016.9:g.8631 2520_86312521ins64 NC_000016.9:g.8631 2520_86312521ins64	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,520	86,312,520

Showing 18 of 27

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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