Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv3358754

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:19,936

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 458 SVs from 72 studies. See in: genome view

Submitted genomic55,788,551-55,808,486

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3358754	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	55,788,551	55,808,486
nsv3358754	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	55,822,463	55,842,398

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14579312	inversion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14581683	inversion	SAMN02744161	Sequencing	de novo and local sequence assembly	20,941
nssv14591326	inversion	SAMN05603745	Sequencing	de novo and local sequence assembly	27,447

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14579312	Submitted genomic		NC_000016.10:g.557 88551_55808486inv	GRCh38 (hg38)		NC_000016.10	Chr16	55,788,551	55,808,486
nssv14581683	Submitted genomic		NC_000016.10:g.557 88551_55808486inv	GRCh38 (hg38)		NC_000016.10	Chr16	55,788,551	55,808,486
nssv14591326	Submitted genomic		NC_000016.10:g.557 88551_55808486inv	GRCh38 (hg38)		NC_000016.10	Chr16	55,788,551	55,808,486
nssv14579312	Remapped	Perfect	NC_000016.9:g.5582 2463_55842398invNC _000016.9:g.558224 63_55842398inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	55,822,463	55,842,398
nssv14581683	Remapped	Perfect	NC_000016.9:g.5582 2463_55842398invNC _000016.9:g.558224 63_55842398inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	55,822,463	55,842,398
nssv14591326	Remapped	Perfect	NC_000016.9:g.5582 2463_55842398invNC _000016.9:g.558224 63_55842398inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	55,822,463	55,842,398

Showing 6 of 9

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI