nsv3358809
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 267 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 267 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3358809 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nsv3358809 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14535975 | herv insertion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
| nssv14536341 | herv insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
| nssv14536601 | herv insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
| nssv14538051 | herv insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14539591 | herv insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
| nssv14539603 | herv insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
| nssv14539883 | herv insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
| nssv14541773 | herv insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
| nssv14545408 | herv insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
| nssv14546642 | herv insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
| nssv14549267 | herv insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14550211 | herv insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
| nssv14551117 | herv insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
| nssv14551946 | herv insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14535975 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14536341 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14536601 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14538051 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14539591 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14539603 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14539883 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14541773 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14545408 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14546642 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14549267 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14550211 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14551117 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14551946 | Submitted genomic | NC_000013.11:g.902 91103_90291104ins5 8 | GRCh38 (hg38) | NC_000013.11 | Chr13 | 90,291,103 | 90,291,103 | ||
| nssv14535975 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14536341 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14536601 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14538051 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14539591 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14539603 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14539883 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14541773 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14545408 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14546642 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14549267 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14550211 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14551117 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |
| nssv14551946 | Remapped | Perfect | NC_000013.10:g.909 43357_90943358ins5 8NC_000013.10:g.90 943357_90943358ins 58 | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 90,943,357 | 90,943,357 |