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dbVar

Database of genomic structural variation

nsv3363382

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 146 SVs from 28 studies. See in: genome view

Submitted genomic192,131,238-192,131,238

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3363382	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000002.12	Chr2	192,131,238	192,131,238
nsv3363382	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	192,995,964	192,995,964

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14639219	herv insertion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14641600	herv insertion	SAMN04229552	Sequencing	de novo and local sequence assembly	24,632
nssv14642735	herv insertion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14645025	herv insertion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14647750	herv insertion	SAMN03255769	Sequencing	de novo and local sequence assembly	21,134

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14639219	Submitted genomic		NC_000002.12:g.192 131238_192131239in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,238	192,131,238
nssv14641600	Submitted genomic		NC_000002.12:g.192 131238_192131239in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,238	192,131,238
nssv14642735	Submitted genomic		NC_000002.12:g.192 131238_192131239in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,238	192,131,238
nssv14645025	Submitted genomic		NC_000002.12:g.192 131238_192131239in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,238	192,131,238
nssv14647750	Submitted genomic		NC_000002.12:g.192 131238_192131239in s61	GRCh38 (hg38)		NC_000002.12	Chr2	192,131,238	192,131,238
nssv14639219	Remapped	Perfect	NC_000002.11:g.192 995964_192995965in s61NC_000002.11:g. 192995964_19299596 5ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,964	192,995,964
nssv14641600	Remapped	Perfect	NC_000002.11:g.192 995964_192995965in s61NC_000002.11:g. 192995964_19299596 5ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,964	192,995,964
nssv14642735	Remapped	Perfect	NC_000002.11:g.192 995964_192995965in s61NC_000002.11:g. 192995964_19299596 5ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,964	192,995,964
nssv14645025	Remapped	Perfect	NC_000002.11:g.192 995964_192995965in s61NC_000002.11:g. 192995964_19299596 5ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,964	192,995,964
nssv14647750	Remapped	Perfect	NC_000002.11:g.192 995964_192995965in s61NC_000002.11:g. 192995964_19299596 5ins61	GRCh37.p13	First Pass	NC_000002.11	Chr2	192,995,964	192,995,964

Showing 10 of 15

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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