nsv3371335
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 147 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 147 SVs from 29 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3371335 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nsv3371335 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv14634326 | herv insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
nssv14640236 | herv insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
nssv14640375 | herv insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
nssv14640488 | herv insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
nssv14642702 | herv insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
nssv14643761 | herv insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
nssv14643970 | herv insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
nssv14646156 | herv insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
nssv14646563 | herv insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
nssv14647705 | herv insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
nssv14647763 | herv insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
nssv14649106 | herv insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14634326 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14640236 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14640375 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14640488 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14642702 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14643761 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14643970 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14646156 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14646563 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14647705 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14647763 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14649106 | Submitted genomic | NC_000002.12:g.192 131144_192131145in s61 | GRCh38 (hg38) | NC_000002.12 | Chr2 | 192,131,144 | 192,131,144 | ||
nssv14634326 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14640236 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14640375 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14640488 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14642702 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14643761 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14643970 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14646156 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14646563 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14647705 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14647763 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |
nssv14649106 | Remapped | Perfect | NC_000002.11:g.192 995870_192995871in s61NC_000002.11:g. 192995870_19299587 1ins61 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 192,995,870 | 192,995,870 |