nsv3371532
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,625
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 202 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 202 SVs from 43 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3371532 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nsv3371532 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv14612518 | inversion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
nssv14616067 | inversion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
nssv14616376 | inversion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
nssv14618580 | inversion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
nssv14621751 | inversion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
nssv14621811 | inversion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
nssv14622559 | inversion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
nssv14628366 | inversion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
nssv14629304 | inversion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
nssv14629365 | inversion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
nssv14629700 | inversion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
nssv14629756 | inversion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14612518 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14616067 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14616376 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14618580 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14621751 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14621811 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14622559 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14628366 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14629304 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14629365 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14629700 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14629756 | Submitted genomic | NC_000019.10:g.387 69343_38782967inv | GRCh38 (hg38) | NC_000019.10 | Chr19 | 38,769,343 | 38,782,967 | ||
nssv14612518 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14616067 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14616376 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14618580 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14621751 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14621811 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14622559 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14628366 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14629304 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14629365 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14629700 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |
nssv14629756 | Remapped | Perfect | NC_000019.9:g.3925 9983_39273607invNC _000019.9:g.392599 83_39273607inv | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 39,259,983 | 39,273,607 |