nsv3402157
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 128 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 128 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3402157 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 97,216,623 | 97,216,623 | ||
| nsv3402157 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 99,978,905 | 99,978,905 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14782026 | herv insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14782026 | Submitted genomic | NC_000009.12:g.972 16623_97216624ins2 13 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 97,216,623 | 97,216,623 | ||
| nssv14782026 | Remapped | Perfect | NC_000009.11:g.999 78905_99978906ins2 13NC_000009.11:g.9 9978905_99978906in s213 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 99,978,905 | 99,978,905 |