nsv3406339
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,911
- Description:Absence of a HERV insertion that is present in the reference
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 460 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 460 SVs from 66 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3406339 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 150,036,623 | 150,038,533 | ||
| nsv3406339 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 149,733,712 | 149,735,622 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14732119 | herv deletion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
| nssv14751728 | herv deletion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14732119 | Submitted genomic | NC_000007.14:g.150 036623_150038533de l | GRCh38 (hg38) | NC_000007.14 | Chr7 | 150,036,623 | 150,038,533 | ||
| nssv14751728 | Submitted genomic | NC_000007.14:g.150 036623_150038533de l | GRCh38 (hg38) | NC_000007.14 | Chr7 | 150,036,623 | 150,038,533 | ||
| nssv14732119 | Remapped | Perfect | NC_000007.13:g.149 733712_149735622de lNC_000007.13:g.14 9733712_149735622d el | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 149,733,712 | 149,735,622 |
| nssv14751728 | Remapped | Perfect | NC_000007.13:g.149 733712_149735622de lNC_000007.13:g.14 9733712_149735622d el | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 149,733,712 | 149,735,622 |