nsv3415686
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 131 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 131 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3415686 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 109,650,341 | 109,650,341 | ||
| nsv3415686 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 112,412,621 | 112,412,621 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14775469 | sva insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
| nssv14776132 | sva insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14775469 | Submitted genomic | NC_000009.12:g.109 650341_109650342in s2721 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 109,650,341 | 109,650,341 | ||
| nssv14776132 | Submitted genomic | NC_000009.12:g.109 650341_109650342in s2721 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 109,650,341 | 109,650,341 | ||
| nssv14775469 | Remapped | Perfect | NC_000009.11:g.112 412621_112412622in s2721NC_000009.11: g.112412621_112412 622ins2721 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 112,412,621 | 112,412,621 |
| nssv14776132 | Remapped | Perfect | NC_000009.11:g.112 412621_112412622in s2721NC_000009.11: g.112412621_112412 622ins2721 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 112,412,621 | 112,412,621 |