nsv3417917
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 146 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 146 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3417917 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nsv3417917 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14753342 | sva insertion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
| nssv14754055 | sva insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
| nssv14757234 | sva insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14757607 | sva insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
| nssv14758275 | sva insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14758363 | sva insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
| nssv14762443 | sva insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
| nssv14763024 | sva insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
| nssv14765210 | sva insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
| nssv14766496 | sva insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
| nssv14767277 | sva insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
| nssv14768308 | sva insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
| nssv14770999 | sva insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
| nssv14771698 | sva insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14753342 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14754055 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14757234 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14757607 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14758275 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14758363 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14762443 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14763024 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14765210 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14766496 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14767277 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14768308 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14770999 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14771698 | Submitted genomic | NC_000007.14:g.139 101479_139101480in s380 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 139,101,479 | 139,101,479 | ||
| nssv14753342 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14754055 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14757234 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14757607 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14758275 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14758363 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14762443 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14763024 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14765210 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14766496 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14767277 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14768308 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14770999 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |
| nssv14771698 | Remapped | Perfect | NC_000007.13:g.138 786225_138786226in s380NC_000007.13:g .138786225_1387862 26ins380 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,786,225 | 138,786,225 |