nsv3417929
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 144 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 144 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3417929 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nsv3417929 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14753333 | alu insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
| nssv14755461 | alu insertion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
| nssv14758342 | alu insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
| nssv14758982 | alu insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14760618 | alu insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
| nssv14760958 | alu insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
| nssv14763269 | alu insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
| nssv14765775 | alu insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
| nssv14766924 | alu insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14767134 | alu insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
| nssv14767272 | alu insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
| nssv14767395 | alu insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
| nssv14768686 | alu insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
| nssv14771394 | alu insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14753333 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14755461 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14758342 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14758982 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14760618 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14760958 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14763269 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14765775 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14766924 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14767134 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14767272 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14767395 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14768686 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14771394 | Submitted genomic | NC_000007.14:g.138 650778_138650779in s1269 | GRCh38 (hg38) | NC_000007.14 | Chr7 | 138,650,778 | 138,650,778 | ||
| nssv14753333 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14755461 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14758342 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14758982 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14760618 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14760958 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14763269 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14765775 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14766924 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14767134 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14767272 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14767395 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14768686 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |
| nssv14771394 | Remapped | Perfect | NC_000007.13:g.138 335523_138335524in s1269NC_000007.13: g.138335523_138335 524ins1269 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 138,335,523 | 138,335,523 |