nsv3418296
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 169 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 172 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3418296 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 72,616,618 | 72,616,618 | ||
| nsv3418296 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 75,231,534 | 75,231,534 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14773982 | alu insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
| nssv14774921 | alu insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
| nssv14775491 | alu insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
| nssv14782962 | alu insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14773982 | Submitted genomic | NC_000009.12:g.726 16618_72616619ins3 16 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 72,616,618 | 72,616,618 | ||
| nssv14774921 | Submitted genomic | NC_000009.12:g.726 16618_72616619ins3 16 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 72,616,618 | 72,616,618 | ||
| nssv14775491 | Submitted genomic | NC_000009.12:g.726 16618_72616619ins3 16 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 72,616,618 | 72,616,618 | ||
| nssv14782962 | Submitted genomic | NC_000009.12:g.726 16618_72616619ins3 16 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 72,616,618 | 72,616,618 | ||
| nssv14773982 | Remapped | Perfect | NC_000009.11:g.752 31534_75231535ins3 16NC_000009.11:g.7 5231534_75231535in s316 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 75,231,534 | 75,231,534 |
| nssv14774921 | Remapped | Perfect | NC_000009.11:g.752 31534_75231535ins3 16NC_000009.11:g.7 5231534_75231535in s316 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 75,231,534 | 75,231,534 |
| nssv14775491 | Remapped | Perfect | NC_000009.11:g.752 31534_75231535ins3 16NC_000009.11:g.7 5231534_75231535in s316 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 75,231,534 | 75,231,534 |
| nssv14782962 | Remapped | Perfect | NC_000009.11:g.752 31534_75231535ins3 16NC_000009.11:g.7 5231534_75231535in s316 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 75,231,534 | 75,231,534 |