nsv3418508
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 371 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 371 SVs from 26 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3418508 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nsv3418508 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv14792247 | sva insertion | SAMN09643900 | Sequencing | de novo and local sequence assembly | 26,631 |
nssv14792546 | sva insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
nssv14796476 | sva insertion | SAMN06885952 | Sequencing | de novo and local sequence assembly | 28,070 |
nssv14799088 | sva insertion | SAMN09690649 | Sequencing | de novo and local sequence assembly | 21,495 |
nssv14799209 | sva insertion | SAMN04229548 | Sequencing | de novo and local sequence assembly | 23,009 |
nssv14799731 | sva insertion | SAMN09651199 | Sequencing | de novo and local sequence assembly | 27,381 |
nssv14800474 | sva insertion | SAMN03255769 | Sequencing | de novo and local sequence assembly | 21,134 |
nssv14801710 | sva insertion | SAMN02744161 | Sequencing | de novo and local sequence assembly | 20,941 |
nssv14804581 | sva insertion | SAMN05603745 | Sequencing | de novo and local sequence assembly | 27,447 |
nssv14805908 | sva insertion | SAMN05603729 | Sequencing | de novo and local sequence assembly | 24,108 |
nssv14808206 | sva insertion | SAMN03838746 | Sequencing | de novo and local sequence assembly | 26,336 |
nssv14808986 | sva insertion | SAMN05181962 | Sequencing | de novo and local sequence assembly | 23,563 |
nssv14810173 | sva insertion | SAMN04251426 | Sequencing | de novo and local sequence assembly | 22,074 |
nssv14811372 | sva insertion | SAMN04229552 | Sequencing | de novo and local sequence assembly | 24,632 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14792247 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14792546 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14796476 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14799088 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14799209 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14799731 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14800474 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14801710 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14804581 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14805908 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14808206 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14808986 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14810173 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14811372 | Submitted genomic | NC_000023.11:g.654 57304_65457305ins3 47 | GRCh38 (hg38) | NC_000023.11 | ChrX | 65,457,304 | 65,457,304 | ||
nssv14792247 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14792546 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14796476 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14799088 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14799209 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14799731 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14800474 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14801710 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14804581 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14805908 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14808206 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14808986 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14810173 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |
nssv14811372 | Remapped | Perfect | NC_000023.10:g.646 77184_64677185ins3 47NC_000023.10:g.6 4677184_64677185in s347 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 64,677,184 | 64,677,184 |