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dbVar

Database of genomic structural variation

nsv3418830

Organism: Homo sapiens

Study:nstd164 (Karolak et al. 2019)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,120,156

Publication(s):Karolak et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 5284 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):61,195,481-63,315,636

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3418830	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	61,195,481	61,195,485	63,315,632	63,315,636
nsv3418830	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	59,272,842	59,272,846	61,392,993	61,392,997

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis
nssv14814882	copy number loss	P035	Oligo aCGH	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14814882	Remapped	Perfect	NC_000017.11:g.(61 195481_61195485)_( 63315632_63315636) del	GRCh38.p12	First Pass	NC_000017.11	Chr17	61,195,481	61,195,485	63,315,632	63,315,636
nssv14814882	Submitted genomic		NC_000017.10:g.(59 272842_59272846)_( 61392993_61392997) del	GRCh37 (hg19)		NC_000017.10	Chr17	59,272,842	59,272,846	61,392,993	61,392,997

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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