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dbVar

Database of genomic structural variation

nsv3527925

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:95

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 84 SVs from 19 studies. See in: genome view

Submitted genomic99,535,434-99,535,528

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3527925	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000010.11	Chr10	99,535,434 (-0, +10)	99,535,528
nsv3527925	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	101,295,191 (-0, +10)	101,295,285

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14352905	deletion	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14352906	deletion	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14352907	deletion	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14352908	deletion	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732
nssv14352909	deletion	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14352905	Submitted genomic		NC_000010.11:g.(99 535434_99535444)_9 9535528del	GRCh38 (hg38)		NC_000010.11	Chr10	99,535,434 (-0, +10)	99,535,528
nssv14352906	Submitted genomic		NC_000010.11:g.(99 535434_99535444)_9 9535528del	GRCh38 (hg38)		NC_000010.11	Chr10	99,535,434 (-0, +10)	99,535,528
nssv14352907	Submitted genomic		NC_000010.11:g.(99 535434_99535444)_9 9535528del	GRCh38 (hg38)		NC_000010.11	Chr10	99,535,434 (-0, +10)	99,535,528
nssv14352908	Submitted genomic		NC_000010.11:g.(99 535434_99535444)_9 9535528del	GRCh38 (hg38)		NC_000010.11	Chr10	99,535,434 (-0, +10)	99,535,528
nssv14352909	Submitted genomic		NC_000010.11:g.(99 535434_99535444)_9 9535528del	GRCh38 (hg38)		NC_000010.11	Chr10	99,535,434 (-0, +10)	99,535,528
nssv14352905	Remapped	Perfect	NC_000010.10:g.(10 1295191_101295201) _101295285del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,295,191 (-0, +10)	101,295,285
nssv14352906	Remapped	Perfect	NC_000010.10:g.(10 1295191_101295201) _101295285del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,295,191 (-0, +10)	101,295,285
nssv14352907	Remapped	Perfect	NC_000010.10:g.(10 1295191_101295201) _101295285del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,295,191 (-0, +10)	101,295,285
nssv14352908	Remapped	Perfect	NC_000010.10:g.(10 1295191_101295201) _101295285del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,295,191 (-0, +10)	101,295,285
nssv14352909	Remapped	Perfect	NC_000010.10:g.(10 1295191_101295201) _101295285del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,295,191 (-0, +10)	101,295,285

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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