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dbVar

Database of genomic structural variation

nsv3536234

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:mobile element insertion
Method Type:Optical mapping, Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Description:Insertion of a HERV mobile element relative to the reference
Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 379 SVs from 43 studies. See in: genome view

Submitted genomic4,005,086-4,005,086

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3536234	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000004.12	Chr4	4,005,086	4,005,086
nsv3536234	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	4,006,813	4,006,813

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14423186	herv insertion	HG00514	Optical mapping, Sequencing	Optical mapping, Sequence alignment, de novo and local sequence assembly	39,861

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14423186	Submitted genomic		NC_000004.12:g.400 5086_4005087ins83	GRCh38 (hg38)		NC_000004.12	Chr4	4,005,086	4,005,086
nssv14423186	Remapped	Perfect	NC_000004.11:g.400 6813_4006814ins83	GRCh37.p13	First Pass	NC_000004.11	Chr4	4,006,813	4,006,813

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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