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dbVar

Database of genomic structural variation

nsv3553272

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:60,724

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 460 SVs from 60 studies. See in: genome view

Submitted genomic87,238,106-87,298,831

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3553272	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000010.11	Chr10	87,238,107 (-1, +0)	87,298,830 (-0, +1)
nsv3553272	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	88,997,864 (-1, +0)	89,058,587 (-0, +1)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14456339	inversion	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14458333	inversion	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591
nssv14459306	inversion	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14464918	inversion	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14465996	inversion	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14456339	Submitted genomic		NC_000010.11:g.(87 238106_87238107)_( 87298830_87298831) inv	GRCh38 (hg38)		NC_000010.11	Chr10	87,238,107 (-1, +0)	87,298,830 (-0, +1)
nssv14458333	Submitted genomic		NC_000010.11:g.(87 238106_87238107)_( 87298830_87298831) inv	GRCh38 (hg38)		NC_000010.11	Chr10	87,238,107 (-1, +0)	87,298,830 (-0, +1)
nssv14459306	Submitted genomic		NC_000010.11:g.(87 238106_87238107)_( 87298830_87298831) inv	GRCh38 (hg38)		NC_000010.11	Chr10	87,238,107 (-1, +0)	87,298,830 (-0, +1)
nssv14464918	Submitted genomic		NC_000010.11:g.(87 238106_87238107)_( 87298830_87298831) inv	GRCh38 (hg38)		NC_000010.11	Chr10	87,238,107 (-1, +0)	87,298,830 (-0, +1)
nssv14465996	Submitted genomic		NC_000010.11:g.(87 238106_87238107)_( 87298830_87298831) inv	GRCh38 (hg38)		NC_000010.11	Chr10	87,238,107 (-1, +0)	87,298,830 (-0, +1)
nssv14456339	Remapped	Perfect	NC_000010.10:g.(88 997863_88997864)_( 89058587_89058588) inv	GRCh37.p13	First Pass	NC_000010.10	Chr10	88,997,864 (-1, +0)	89,058,587 (-0, +1)
nssv14458333	Remapped	Perfect	NC_000010.10:g.(88 997863_88997864)_( 89058587_89058588) inv	GRCh37.p13	First Pass	NC_000010.10	Chr10	88,997,864 (-1, +0)	89,058,587 (-0, +1)
nssv14459306	Remapped	Perfect	NC_000010.10:g.(88 997863_88997864)_( 89058587_89058588) inv	GRCh37.p13	First Pass	NC_000010.10	Chr10	88,997,864 (-1, +0)	89,058,587 (-0, +1)
nssv14464918	Remapped	Perfect	NC_000010.10:g.(88 997863_88997864)_( 89058587_89058588) inv	GRCh37.p13	First Pass	NC_000010.10	Chr10	88,997,864 (-1, +0)	89,058,587 (-0, +1)
nssv14465996	Remapped	Perfect	NC_000010.10:g.(88 997863_88997864)_( 89058587_89058588) inv	GRCh37.p13	First Pass	NC_000010.10	Chr10	88,997,864 (-1, +0)	89,058,587 (-0, +1)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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