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dbVar

Database of genomic structural variation

nsv3554663

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:19,505

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 357 SVs from 66 studies. See in: genome view

Submitted genomic48,880,466-48,899,972

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3554663	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nsv3554663	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14453819	inversion	SAMN00001694	Sequencing	Sequence alignment	Homozygous	16,419
nssv14454609	inversion	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14459102	inversion	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732
nssv14461069	inversion	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14466238	inversion	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591
nssv14467413	inversion	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14453819	Submitted genomic		NC_000011.10:g.(48 880466_48880467)_( 48899971_48899972) inv	GRCh38 (hg38)		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nssv14454609	Submitted genomic		NC_000011.10:g.(48 880466_48880467)_( 48899971_48899972) inv	GRCh38 (hg38)		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nssv14459102	Submitted genomic		NC_000011.10:g.(48 880466_48880467)_( 48899971_48899972) inv	GRCh38 (hg38)		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nssv14461069	Submitted genomic		NC_000011.10:g.(48 880466_48880467)_( 48899971_48899972) inv	GRCh38 (hg38)		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nssv14466238	Submitted genomic		NC_000011.10:g.(48 880466_48880467)_( 48899971_48899972) inv	GRCh38 (hg38)		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nssv14467413	Submitted genomic		NC_000011.10:g.(48 880466_48880467)_( 48899971_48899972) inv	GRCh38 (hg38)		NC_000011.10	Chr11	48,880,467 (-1, +0)	48,899,971 (-0, +1)
nssv14453819	Remapped	Perfect	NC_000011.9:g.(489 02018_48902019)_(4 8921523_48921524)i nv	GRCh37.p13	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)
nssv14454609	Remapped	Perfect	NC_000011.9:g.(489 02018_48902019)_(4 8921523_48921524)i nv	GRCh37.p13	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)
nssv14459102	Remapped	Perfect	NC_000011.9:g.(489 02018_48902019)_(4 8921523_48921524)i nv	GRCh37.p13	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)
nssv14461069	Remapped	Perfect	NC_000011.9:g.(489 02018_48902019)_(4 8921523_48921524)i nv	GRCh37.p13	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)
nssv14466238	Remapped	Perfect	NC_000011.9:g.(489 02018_48902019)_(4 8921523_48921524)i nv	GRCh37.p13	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)
nssv14467413	Remapped	Perfect	NC_000011.9:g.(489 02018_48902019)_(4 8921523_48921524)i nv	GRCh37.p13	First Pass	NC_000011.9	Chr11	48,902,019 (-1, +0)	48,921,523 (-0, +1)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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