nsv3557560
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:8,408
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 188 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 190 SVs from 47 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3557560 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nsv3557560 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14285667 | sequence alteration | HG00512 | Sequencing | Sequence alignment | Heterozygous | 13,827 |
| nssv14285668 | sequence alteration | SAMN00006466 | Sequencing | Sequence alignment | Heterozygous | 14,137 |
| nssv14285669 | sequence alteration | HG00514 | Sequencing | Sequence alignment | Heterozygous | 39,861 |
| nssv14285670 | sequence alteration | SAMN00006580 | Sequencing | Sequence alignment | Heterozygous | 14,212 |
| nssv14285671 | sequence alteration | SAMN00006581 | Sequencing | Sequence alignment | Heterozygous | 41,185 |
| nssv14285672 | sequence alteration | SAMN00001694 | Sequencing | Sequence alignment | Heterozygous | 16,419 |
| nssv14285673 | sequence alteration | SAMN00001696 | Sequencing | Sequence alignment | Heterozygous | 45,591 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv14285667 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285668 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285669 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285670 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285671 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285672 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285673 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 114,103,332 (-0, +5) | 114,111,739 (-4, +4) | ||
| nssv14285667 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
| nssv14285668 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
| nssv14285669 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
| nssv14285670 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
| nssv14285671 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
| nssv14285672 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |
| nssv14285673 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 114,645,954 (-0, +5) | 114,654,361 (-4, +4) |