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dbVar

Database of genomic structural variation

nsv3558086

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:sequence alteration
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:115,025

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 423 SVs from 53 studies. See in: genome view

Submitted genomic224,945,608-225,060,647

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3558086	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nsv3558086	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14310607	sequence alteration	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14310608	sequence alteration	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14310609	sequence alteration	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14310610	sequence alteration	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14310611	sequence alteration	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14310612	sequence alteration	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14310613	sequence alteration	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14310614	sequence alteration	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732
nssv14310615	sequence alteration	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14310607	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310608	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310609	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310610	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310611	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310612	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310613	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310614	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310615	Submitted genomic		GRCh38 (hg38)		NC_000001.11	Chr1	224,945,608	225,060,632 (-3, +15)
nssv14310607	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310608	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310609	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310610	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310611	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310612	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310613	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310614	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)
nssv14310615	Remapped	Perfect	GRCh37.p13	First Pass	NC_000001.10	Chr1	225,133,310	225,248,334 (-3, +15)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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