nsv3558313
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,559
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 174 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 174 SVs from 44 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3558313 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 97,445,822 (-0, +1) | 97,460,380 (-0, +3) | ||
| nsv3558313 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 97,075,134 (-0, +1) | 97,089,692 (-0, +3) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14335523 | sequence alteration | SAMN00006579 | Sequencing | Sequence alignment | Heterozygous | 13,953 |
| nssv14335524 | sequence alteration | SAMN00006580 | Sequencing | Sequence alignment | Heterozygous | 14,212 |
| nssv14335525 | sequence alteration | SAMN00006581 | Sequencing | Sequence alignment | Heterozygous | 41,185 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv14335523 | Submitted genomic | GRCh38 (hg38) | NC_000007.14 | Chr7 | 97,445,822 (-0, +1) | 97,460,380 (-0, +3) | ||
| nssv14335524 | Submitted genomic | GRCh38 (hg38) | NC_000007.14 | Chr7 | 97,445,822 (-0, +1) | 97,460,380 (-0, +3) | ||
| nssv14335525 | Submitted genomic | GRCh38 (hg38) | NC_000007.14 | Chr7 | 97,445,822 (-0, +1) | 97,460,380 (-0, +3) | ||
| nssv14335523 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 97,075,134 (-0, +1) | 97,089,692 (-0, +3) |
| nssv14335524 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 97,075,134 (-0, +1) | 97,089,692 (-0, +3) |
| nssv14335525 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 97,075,134 (-0, +1) | 97,089,692 (-0, +3) |