nsv3565188
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a L1 mobile element relative to the reference
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 257 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 257 SVs from 31 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3565188 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000008.11 | Chr8 | 111,109,085 (-15, +15) | 111,109,085 (-15, +15) | ||
nsv3565188 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 112,121,314 (-15, +15) | 112,121,314 (-15, +15) |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv14343685 | line1 insertion | SAMN00001694 | Sequencing | Sequence alignment | Heterozygous | 16,419 |
nssv14343686 | line1 insertion | SAMN00001695 | Sequencing | Sequence alignment | Heterozygous | 15,732 |
nssv14343687 | line1 insertion | SAMN00001696 | Sequencing | Sequence alignment | Heterozygous | 45,591 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14343685 | Submitted genomic | NC_000008.11:g.(11 1109070_111109100) _(111109070_111109 100)ins316 | GRCh38 (hg38) | NC_000008.11 | Chr8 | 111,109,085 (-15, +15) | 111,109,085 (-15, +15) | ||
nssv14343686 | Submitted genomic | NC_000008.11:g.(11 1109070_111109100) _(111109070_111109 100)ins316 | GRCh38 (hg38) | NC_000008.11 | Chr8 | 111,109,085 (-15, +15) | 111,109,085 (-15, +15) | ||
nssv14343687 | Submitted genomic | NC_000008.11:g.(11 1109070_111109100) _(111109070_111109 100)ins316 | GRCh38 (hg38) | NC_000008.11 | Chr8 | 111,109,085 (-15, +15) | 111,109,085 (-15, +15) | ||
nssv14343685 | Remapped | Perfect | NC_000008.10:g.(11 2121299_112121329) _(112121299_112121 329)ins316 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,121,314 (-15, +15) | 112,121,314 (-15, +15) |
nssv14343686 | Remapped | Perfect | NC_000008.10:g.(11 2121299_112121329) _(112121299_112121 329)ins316 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,121,314 (-15, +15) | 112,121,314 (-15, +15) |
nssv14343687 | Remapped | Perfect | NC_000008.10:g.(11 2121299_112121329) _(112121299_112121 329)ins316 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,121,314 (-15, +15) | 112,121,314 (-15, +15) |