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dbVar

Database of genomic structural variation

nsv3565474

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:1

Description:Insertion of a L1 mobile element relative to the reference
Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 419 SVs from 54 studies. See in: genome view

Submitted genomic5,971,745-5,971,775

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3565474	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nsv3565474	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14340641	line1 insertion	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14340642	line1 insertion	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14340643	line1 insertion	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14340644	line1 insertion	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14340645	line1 insertion	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14340646	line1 insertion	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185
nssv14340647	line1 insertion	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14340648	line1 insertion	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14340641	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340642	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340643	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340644	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340645	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340646	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340647	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340648	Submitted genomic		NC_000008.11:g.(59 71745_5971775)_(59 71745_5971775)ins5 96	GRCh38 (hg38)		NC_000008.11	Chr8	5,971,760 (-15, +15)	5,971,760 (-15, +15)
nssv14340641	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340642	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340643	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340644	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340645	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340646	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340647	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)
nssv14340648	Remapped	Perfect	NC_000008.10:g.(58 29267_5829297)_(58 29267_5829297)ins5 96	GRCh37.p13	First Pass	NC_000008.10	Chr8	5,829,282 (-15, +15)	5,829,282 (-15, +15)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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