nsv3565670
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a L1 mobile element relative to the reference
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 119 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 35 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3565670 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 122,657,291 (-15, +15) | 122,657,291 (-15, +15) | ||
nsv3565670 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 125,419,570 (-15, +15) | 125,419,570 (-15, +15) |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv14347642 | line1 insertion | HG00512 | Sequencing | Sequence alignment | Heterozygous | 13,827 |
nssv14347643 | line1 insertion | SAMN00006466 | Sequencing | Sequence alignment | Heterozygous | 14,137 |
nssv14347644 | line1 insertion | HG00514 | Sequencing | Sequence alignment | Heterozygous | 39,861 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14347642 | Submitted genomic | NC_000009.12:g.(12 2657276_122657306) _(122657276_122657 306)ins332 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 122,657,291 (-15, +15) | 122,657,291 (-15, +15) | ||
nssv14347643 | Submitted genomic | NC_000009.12:g.(12 2657276_122657306) _(122657276_122657 306)ins332 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 122,657,291 (-15, +15) | 122,657,291 (-15, +15) | ||
nssv14347644 | Submitted genomic | NC_000009.12:g.(12 2657276_122657306) _(122657276_122657 306)ins332 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 122,657,291 (-15, +15) | 122,657,291 (-15, +15) | ||
nssv14347642 | Remapped | Perfect | NC_000009.11:g.(12 5419555_125419585) _(125419555_125419 585)ins332 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 125,419,570 (-15, +15) | 125,419,570 (-15, +15) |
nssv14347643 | Remapped | Perfect | NC_000009.11:g.(12 5419555_125419585) _(125419555_125419 585)ins332 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 125,419,570 (-15, +15) | 125,419,570 (-15, +15) |
nssv14347644 | Remapped | Perfect | NC_000009.11:g.(12 5419555_125419585) _(125419555_125419 585)ins332 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 125,419,570 (-15, +15) | 125,419,570 (-15, +15) |