nsv3565696
- Organism: Homo sapiens
- Study:nstd152 (Chaisson et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a SVA mobile element relative to the reference
- Publication(s):Chaisson et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 212 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 219 SVs from 31 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3565696 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 36,616,407 (-15, +15) | 36,616,407 (-15, +15) | ||
nsv3565696 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 36,616,404 (-15, +15) | 36,616,404 (-15, +15) |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv14346488 | sva insertion | SAMN00001694 | Sequencing | Sequence alignment | Heterozygous | 16,419 |
nssv14346489 | sva insertion | SAMN00001696 | Sequencing | Sequence alignment | Heterozygous | 45,591 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14346488 | Submitted genomic | NC_000009.12:g.(36 616392_36616422)_( 36616392_36616422) ins1069 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 36,616,407 (-15, +15) | 36,616,407 (-15, +15) | ||
nssv14346489 | Submitted genomic | NC_000009.12:g.(36 616392_36616422)_( 36616392_36616422) ins1069 | GRCh38 (hg38) | NC_000009.12 | Chr9 | 36,616,407 (-15, +15) | 36,616,407 (-15, +15) | ||
nssv14346488 | Remapped | Perfect | NC_000009.11:g.(36 616389_36616419)_( 36616389_36616419) ins1069 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 36,616,404 (-15, +15) | 36,616,404 (-15, +15) |
nssv14346489 | Remapped | Perfect | NC_000009.11:g.(36 616389_36616419)_( 36616389_36616419) ins1069 | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 36,616,404 (-15, +15) | 36,616,404 (-15, +15) |