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dbVar

Database of genomic structural variation

nsv3565925

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:1

Description:Insertion of a Alu mobile element relative to the reference
Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 143 SVs from 41 studies. See in: genome view

Submitted genomic93,609,089-93,609,119

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3565925	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000009.12	Chr9	93,609,104 (-15, +15)	93,609,104 (-15, +15)
nsv3565925	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	96,371,386 (-15, +15)	96,371,386 (-15, +15)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14348934	alu insertion	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14348935	alu insertion	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14348936	alu insertion	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14348934	Submitted genomic		NC_000009.12:g.(93 609089_93609119)_( 93609089_93609119) ins281	GRCh38 (hg38)		NC_000009.12	Chr9	93,609,104 (-15, +15)	93,609,104 (-15, +15)
nssv14348935	Submitted genomic		NC_000009.12:g.(93 609089_93609119)_( 93609089_93609119) ins281	GRCh38 (hg38)		NC_000009.12	Chr9	93,609,104 (-15, +15)	93,609,104 (-15, +15)
nssv14348936	Submitted genomic		NC_000009.12:g.(93 609089_93609119)_( 93609089_93609119) ins281	GRCh38 (hg38)		NC_000009.12	Chr9	93,609,104 (-15, +15)	93,609,104 (-15, +15)
nssv14348934	Remapped	Perfect	NC_000009.11:g.(96 371371_96371401)_( 96371371_96371401) ins281	GRCh37.p13	First Pass	NC_000009.11	Chr9	96,371,386 (-15, +15)	96,371,386 (-15, +15)
nssv14348935	Remapped	Perfect	NC_000009.11:g.(96 371371_96371401)_( 96371371_96371401) ins281	GRCh37.p13	First Pass	NC_000009.11	Chr9	96,371,386 (-15, +15)	96,371,386 (-15, +15)
nssv14348936	Remapped	Perfect	NC_000009.11:g.(96 371371_96371401)_( 96371371_96371401) ins281	GRCh37.p13	First Pass	NC_000009.11	Chr9	96,371,386 (-15, +15)	96,371,386 (-15, +15)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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