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dbVar

Database of genomic structural variation

nsv3877424

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:144,600

Description:GRCh37/hg19 Xp21.1(chrX:31951570-32096169)x0 AND See cases

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 475 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):31,933,453-32,078,052

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3877424	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	31,933,453	32,078,052
nsv3877424	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	31,951,570	32,096,169

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv15143621	copy number loss	Multiple	Multiple	See cases	Pathogenic	ClinVar	RCV000511594.2, VCV000442714.2	0

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15143621	Remapped	Perfect	NC_000023.11:g.(?_ 31933453)_(3207805 2_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	31,933,453	32,078,052
nssv15143621	Submitted genomic		NC_000023.10:g.(?_ 31951570)_(3209616 9_?)del	GRCh37 (hg19)		NC_000023.10	ChrX	31,951,570	32,096,169

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv15143621	GRCh37: NC_000023.10:g.(?_31951570)_(32096169_?)del	copy number loss	not provided	See cases	Pathogenic	ClinVar	RCV000511594.2, VCV000442714.2	0

No genotype data were submitted for this variant

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