nsv3881533
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:650,311
- Description:GRCh37/hg19 1p36.11-35.3(chr1:27488298-28138628) AND not specified
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1806 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 1814 SVs from 78 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3881533 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 27,161,807 | 27,812,117 |
| nsv3881533 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 27,488,298 | 28,138,628 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17974031 | copy number loss | Multiple | Multiple | not specified | Pathogenic | ClinVar | RCV002052448.3, VCV001526429.3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17974031 | Remapped | Good | NC_000001.11:g.(?_ 27161807)_(2781211 7_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 27,161,807 | 27,812,117 |
| nssv17974031 | Submitted genomic | NC_000001.10:g.(?_ 27488298)_(2813862 8_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 27,488,298 | 28,138,628 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17974031 | GRCh37: NC_000001.10:g.(?_27488298)_(28138628_?)del | copy number loss | germline | not specified | Pathogenic | ClinVar | RCV002052448.3, VCV001526429.3 |