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dbVar

Database of genomic structural variation

nsv3889968

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: Yes
Region Size:7,579

Description:
See descriptions for individual calls in download files
Publication(s):ACMG Board of Directors et al. 2014, Civeira et al. 2004, Cuchel et al. 2014, Feldman et al. 2015, Goldberg et al. 2011, Green et al. 2013, Kalia et al. 2016, Miller et al. 2021, Miller et al. 2022, Mysliwiec et al. 2014, Rynkiewicz et al. 2013, Sullivan et al. 2012, Watts et al. 2013, Youngblom et al. 2014

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 97 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):11,101,505-11,109,083

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3889968	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	11,101,505	11,102,664	11,107,514	11,109,083
nsv3889968	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	11,212,181	11,213,340	11,218,190	11,219,759

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv15129966	deletion	Multiple	Multiple	Familial Hypercholesterolemia; Familial hypercholesterolemia; HYPERCHOLESTEROLEMIA, FAMILIAL; Homozygous familial hypercholesterolemia; MOVED TO 143890; See individual phenotypes in OMIM allelic variants	Conflicting interpretations of pathogenicity	ClinVar	RCV000497087.2, VCV000431508.2
nssv18831004	deletion	Multiple	Multiple	Familial Hypercholesterolemia; Familial hypercholesterolemia; HYPERCHOLESTEROLEMIA, FAMILIAL; Homozygous familial hypercholesterolemia; MOVED TO 143890; See individual phenotypes in OMIM allelic variants	Likely pathogenic	ClinVar	RCV003318756.1, VCV002574174.1

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv15129966	Remapped	Perfect	NC_000019.10:g.(11 101505_11102664)_( 11107514_11109083) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	11,101,505	11,102,664	11,107,514	11,109,083
nssv18831004	Remapped	Perfect	NC_000019.10:g.(11 101505_11102664)_( 11107514_11109083) del	GRCh38.p12	First Pass	NC_000019.10	Chr19	11,101,505	11,102,664	11,107,514	11,109,083
nssv15129966	Submitted genomic		NC_000019.9:g.(112 12181_11213340)_(1 1218190_11219759)d el	GRCh37 (hg19)		NC_000019.9	Chr19	11,212,181	11,213,340	11,218,190	11,219,759
nssv18831004	Submitted genomic		NC_000019.9:g.(112 12181_11213340)_(1 1218190_11219759)d el	GRCh37 (hg19)		NC_000019.9	Chr19	11,212,181	11,213,340	11,218,190	11,219,759

No validation data were submitted for this variant

Clinical Assertions There exist variant calls with the same type and copy number with different clinical interpretation.

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv15129966	GRCh37: NC_000019.9:g.(11212181_11213340)_(11218190_11219759)del	deletion	germline	Familial Hypercholesterolemia; Familial hypercholesterolemia; HYPERCHOLESTEROLEMIA, FAMILIAL; Homozygous familial hypercholesterolemia; MOVED TO 143890; See individual phenotypes in OMIM allelic variants	Conflicting interpretations of pathogenicity	ClinVar	RCV000497087.2, VCV000431508.2
nssv18831004	GRCh37: NC_000019.9:g.(11212181_11213340)_(11218190_11219759)del	deletion	germline	Familial Hypercholesterolemia; Familial hypercholesterolemia; HYPERCHOLESTEROLEMIA, FAMILIAL; Homozygous familial hypercholesterolemia; MOVED TO 143890; See individual phenotypes in OMIM allelic variants	Likely pathogenic	ClinVar	RCV003318756.1, VCV002574174.1

No genotype data were submitted for this variant

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