nsv3890859
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:126,248
- Description:GRCh38/hg38 2p16.3(chr2:50827235-50953482)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 701 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 701 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3890859 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000002.12 | Chr2 | 50,827,235 | 50,953,482 |
| nsv3890859 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 51,054,373 | 51,180,620 |
| nsv3890859 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 50,907,877 | 51,034,124 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15138102 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000140747.5, VCV000152099.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15138102 | Submitted genomic | NC_000002.12:g.(?_ 50827235)_(5095348 2_?)del | GRCh38 (hg38) | NC_000002.12 | Chr2 | 50,827,235 | 50,953,482 |
| nssv15138102 | Submitted genomic | NC_000002.11:g.(?_ 51054373)_(5118062 0_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 51,054,373 | 51,180,620 |
| nssv15138102 | Submitted genomic | NC_000002.10:g.(?_ 50907877)_(5103412 4_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 50,907,877 | 51,034,124 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15138102 | GRCh37: NC_000002.11:g.(?_51054373)_(51180620_?)del, GRCh38: NC_000002.12:g.(?_50827235)_(50953482_?)del, NCBI36: NC_000002.10:g.(?_50907877)_(51034124_?)del | copy number loss | paternal | See cases | Pathogenic | ClinVar | RCV000140747.5, VCV000152099.2 | 1 |