nsv3892747
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,205,626
- Description:GRCh38/hg38 1p34.2-34.1(chr1:40462415-44668040)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 9927 SVs from 110 studies. See in: genome view
Overlapping variant regions from other studies: 9927 SVs from 110 studies. See in: genome view
Overlapping variant regions from other studies: 2383 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3892747 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 40,462,415 | 44,668,040 |
| nsv3892747 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 40,928,087 | 45,133,712 |
| nsv3892747 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 40,700,674 | 44,906,299 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15146490 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000053837.6, VCV000059966.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15146490 | Submitted genomic | NC_000001.11:g.(?_ 40462415)_(4466804 0_?)del | GRCh38 (hg38) | NC_000001.11 | Chr1 | 40,462,415 | 44,668,040 |
| nssv15146490 | Submitted genomic | NC_000001.10:g.(?_ 40928087)_(4513371 2_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 40,928,087 | 45,133,712 |
| nssv15146490 | Submitted genomic | NC_000001.9:g.(?_4 0700674)_(44906299 _?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 40,700,674 | 44,906,299 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15146490 | GRCh37: NC_000001.10:g.(?_40928087)_(45133712_?)del, GRCh38: NC_000001.11:g.(?_40462415)_(44668040_?)del, NCBI36: NC_000001.9:g.(?_40700674)_(44906299_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000053837.6, VCV000059966.1 | 1 |